Nano-immunoEra_WP1_Design of tailored bioresponsive elements for antibody detection_Task 1.2_identification, selection and testing of antigen-NA chimera probe for antibody detection

Bagheri, Neda (2024) Nano-immunoEra_WP1_Design of tailored bioresponsive elements for antibody detection_Task 1.2_identification, selection and testing of antigen-NA chimera probe for antibody detection. University of Bologna. DOI 10.6092/unibo/amsacta/7549. [Dataset]
Full text available as:
[thumbnail of Nano-ImmunoEra. WP1 Design of tailored bioresponsive elements for antibody detection  Task 1.2. Identification, selection and testing of antigen-NA chimera probe for the detection of specific target antibody] Archive (Nano-ImmunoEra. WP1 Design of tailored bioresponsive elements for antibody detection Task 1.2. Identification, selection and testing of antigen-NA chimera probe for the detection of specific target antibody)
License: Creative Commons: Attribution 4.0 (CC BY 4.0)

Download (387kB)

Abstract

The presented dataset contains data and images produced in the framework of the Horizon Europe Nano-immunoERA project, regarding identification, selection and testing of antigen-nucleic acid (NA) chimera probe for antibody detection.Here, we show that Toehold Switch DNA hairpins, presenting a rationally designed locked protospacer adjacent motif (PAM) in the loop, can be used to control Cas12a in response to molecular inputs inclouding IgG antibodies.Reconfiguring the Toehold Switch DNA from a hairpin to a duplex conformation through a strand displacement reaction provides an effective means to modulate the accessibility of the PAM, thereby controlling the binding and cleavage activities of Cas12a.Through this approach, we showcase the potential to trigger downstream Cas12a activity by leveraging proximity-based strand displacement reactions in response to target binding.Our system enables rapid, one-pot detection of IgG antibodies and small molecules with high sensitivity and specificity

Abstract
Document type
Dataset
Creators
CreatorsAffiliationORCID
Bagheri, NedaUniversity of Rome Tor Vergata
Keywords
Biosensor, PAM, Cas12, trans-cleavage, CRISPR biosensors, strand displacement reaction
Subjects
DOI
Contributors
Name
Affiliation
ORCID
Type
Chamorro, Alejandro
University of Rome Tor Vergata
Researcher
Idili, Andrea
University of Rome Tor Vergata
Researcher
Bagheri, Neda
University of Rome Tor Vergata
Contact person
Porchetta, Alessandro
University of Rome Tor Vergata
Contact person
Giovanni, Valenti
University of Bologna
Contact person
Deposit date
12 Feb 2024 10:48
Last modified
12 Feb 2024 10:53
Related identifier
Related identifier type
Relation type
Code
DOI
this upload is supplement to
Project name
Nano-ImmunoEra - NANOTECHNOLOGY-ENABLED DETECTION OF CLINICALLY RELEVANT ANTIBODIES FOR EARLY CANCER DIAGNOSIS AND IMMUNOTHERAPY MONITORING
Funding program
EC - HE
URI

Other metadata

Downloads

Downloads

Staff only: View the document

^