Bagheri, Neda
(2024)
Nano-immunoEra_WP1_Design of tailored bioresponsive elements for antibody detection_Task 1.2_identification, selection and testing of antigen-NA chimera probe for antibody detection.
University of Bologna.
DOI
10.6092/unibo/amsacta/7549.
[Dataset]
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Abstract
The presented dataset contains data and images produced in the framework of the Horizon Europe Nano-immunoERA project, regarding identification, selection and testing of antigen-nucleic acid (NA) chimera probe for antibody detection.Here, we show that Toehold Switch DNA hairpins, presenting a rationally designed locked protospacer adjacent motif (PAM) in the loop, can be used to control Cas12a in response to molecular inputs inclouding IgG antibodies.Reconfiguring the Toehold Switch DNA from a hairpin to a duplex conformation through a strand displacement reaction provides an effective means to modulate the accessibility of the PAM, thereby controlling the binding and cleavage activities of Cas12a.Through this approach, we showcase the potential to trigger downstream Cas12a activity by leveraging proximity-based strand displacement reactions in response to target binding.Our system enables rapid, one-pot detection of IgG antibodies and small molecules with high sensitivity and specificity
Abstract
The presented dataset contains data and images produced in the framework of the Horizon Europe Nano-immunoERA project, regarding identification, selection and testing of antigen-nucleic acid (NA) chimera probe for antibody detection.Here, we show that Toehold Switch DNA hairpins, presenting a rationally designed locked protospacer adjacent motif (PAM) in the loop, can be used to control Cas12a in response to molecular inputs inclouding IgG antibodies.Reconfiguring the Toehold Switch DNA from a hairpin to a duplex conformation through a strand displacement reaction provides an effective means to modulate the accessibility of the PAM, thereby controlling the binding and cleavage activities of Cas12a.Through this approach, we showcase the potential to trigger downstream Cas12a activity by leveraging proximity-based strand displacement reactions in response to target binding.Our system enables rapid, one-pot detection of IgG antibodies and small molecules with high sensitivity and specificity
Document type
Dataset
Creators
Keywords
Biosensor, PAM, Cas12, trans-cleavage, CRISPR biosensors, strand displacement reaction
Subjects
DOI
Contributors
Deposit date
12 Feb 2024 10:48
Last modified
12 Feb 2024 10:53
Related identifier
Project name
Funding program
EC - HE
URI
Other metadata
Document type
Dataset
Creators
Keywords
Biosensor, PAM, Cas12, trans-cleavage, CRISPR biosensors, strand displacement reaction
Subjects
DOI
Contributors
Deposit date
12 Feb 2024 10:48
Last modified
12 Feb 2024 10:53
Related identifier
Project name
Funding program
EC - HE
URI
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